{"id":10196,"date":"2016-11-11T15:44:48","date_gmt":"2016-11-11T20:44:48","guid":{"rendered":"https:\/\/www.masterorganicchemistry.com\/?p=10196"},"modified":"2026-01-22T09:19:46","modified_gmt":"2026-01-22T15:19:46","slug":"bond-vibrations-ir-spectroscopy","status":"publish","type":"post","link":"https:\/\/www.masterorganicchemistry.com\/2016\/11\/11\/bond-vibrations-ir-spectroscopy\/","title":{"rendered":"Bond Vibrations, Infrared Spectroscopy, and the &#8220;Ball and Spring&#8221; Model"},"content":{"rendered":"<p><strong>The &#8220;Ball And Spring&#8221; Mental Model\u00a0 For Infrared Spectroscopy<\/strong><\/p>\n<p><strong>Table of Contents<\/strong><\/p>\n<ol>\n<li>\u00a0<a href=\"#one\">Why do UV spectra have such broad peaks?<\/a><\/li>\n<li><a href=\"#two\">The &#8220;stadium&#8221; analogy. Introduction to vibrational energy levels.<\/a><\/li>\n<li><a href=\"#three\">Visualizing different vibrational energy levels<\/a><\/li>\n<li><a href=\"#four\">A useful analogy: the &#8220;ball and spring&#8221; model for bond vibrations<\/a><\/li>\n<li><a href=\"#five\">IR spectroscopy: a tool for observing bond vibrations<\/a><\/li>\n<li><a href=\"#six\">How IR spectroscopy differs from UV spectroscopy<\/a><\/li>\n<li><a href=\"#seven\">A simple IR spectrum: H2O (water). How to tell the difference between the peaks and the baseline<\/a><\/li>\n<li><a href=\"#eight\">Some terms defined: transmission, absorbance, wavenumber<\/a><\/li>\n<li><a href=\"#nine\">Oh crap: a more complex IR spectrum. What do we do?<\/a> (Don&#8217;t panic!)<\/li>\n<li><a href=\"#ten\">[Bonus track: using the &#8220;ball and spring model&#8221; to interpret IR spectra]<\/a><\/li>\n<li><a href=\"#notes\">Notes<\/a><\/li>\n<\/ol>\n<hr \/>\n<h2><a id=\"one\"><\/a>1. Why Are Peaks In UV Spectra So Broad?<\/h2>\n<p><a href=\"https:\/\/www.masterorganicchemistry.com\/2016\/09\/16\/introduction-to-uv-vis-spectroscopy\/\">In the past series of posts on UV spectroscopy,<\/a> we saw that \u00a0UV or visible light can promote electrons from a lower energy orbital to a higher energy orbital, with the energy gap, \u00a0delta E (\u0394E) roughly corresponding to the wavelength of light.<\/p>\n<p>By &#8220;roughly&#8221; I mean that we saw that <strong>UV spectra are not sharp<\/strong>.<\/p>\n<p>Look at 1,3-butadiene, for instance (below). \u00a0The \u03bb<sub>max<\/sub> is 240 nm, but look how broad that region of the spectrum is:\u00a0photons with wavelengths\u00a0from about 235-245 nm (and beyond) will promote the same transition.<\/p>\n<p><img fetchpriority=\"high\" decoding=\"async\" class=\"alignnone wp-image-15458\" src=\"https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/1-absorbance-spectrum-1-3-butadiene-delta-max-240-nm.png\" alt=\"absorbance spectrum 1 3 butadiene delta max 240 nm\" width=\"450\" height=\"355\" srcset=\"https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/1-absorbance-spectrum-1-3-butadiene-delta-max-240-nm.png 633w, https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/1-absorbance-spectrum-1-3-butadiene-delta-max-240-nm-300x237.png 300w, https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/1-absorbance-spectrum-1-3-butadiene-delta-max-240-nm-320x253.png 320w, https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/1-absorbance-spectrum-1-3-butadiene-delta-max-240-nm-360x284.png 360w\" sizes=\"(max-width: 450px) 100vw, 450px\" \/><\/p>\n<p>So why\u00a0are energy levels \u00a0so &#8220;smeared out&#8221; in molecules?<\/p>\n<p>After all, we learn in general chemistry that energy levels are quantized, like the difference in energy between steps on a staircase. Why is there so much leeway?<\/p>\n<p>You know what&#8217;s sharp?\u00a0<strong>Atomic<\/strong> absorbance spectra. Look at sodium (below left). Look how crisply the lines at 589.0 nm and 589.6 nm are\u00a0distinguished.<\/p>\n<p><img decoding=\"async\" class=\"alignnone wp-image-15459\" src=\"https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/2-absorbance-spectrum-sodium-delta-max-589-nm-very-sharp-why-sharp-not-broad.png\" alt=\"absorbance spectrum sodium delta max 589 nm very sharp why sharp not broad\" width=\"450\" height=\"334\" srcset=\"https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/2-absorbance-spectrum-sodium-delta-max-589-nm-very-sharp-why-sharp-not-broad.png 500w, https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/2-absorbance-spectrum-sodium-delta-max-589-nm-very-sharp-why-sharp-not-broad-300x223.png 300w, https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/2-absorbance-spectrum-sodium-delta-max-589-nm-very-sharp-why-sharp-not-broad-320x237.png 320w, https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/2-absorbance-spectrum-sodium-delta-max-589-nm-very-sharp-why-sharp-not-broad-360x267.png 360w\" sizes=\"(max-width: 450px) 100vw, 450px\" \/><\/p>\n<p>That&#8217;s more like it! We can visualize a difference of less than 1 nm of light in this\u00a0<strong>atomic<\/strong> absorbance spectrum.<\/p>\n<p>So what&#8217;s the difference?<\/p>\n<h2><a id=\"two\"><\/a>2. Electronic and Vibrational Energy Levels: The Stadium Analogy<\/h2>\n<p>The brief answer is that electronic energy levels in <strong>atoms<\/strong> are quite simple: they are pure transitions between orbitals. There&#8217;s a few small technicalities\u00a0<span style=\"color: #993366;\">(<a style=\"color: #993366;\" href=\"https:\/\/en.wikipedia.org\/wiki\/Spin\u2013orbit_interaction\">spin-orbit coupling<\/a>: <em>not going to get into that<\/em>)<\/span> but the peaks are\u00a0<em>sharp.\u00a0<\/em><\/p>\n<p>The situation complicates once\u00a0<strong>covalent bonds<\/strong> enter the picture.<\/p>\n<p>Chemical bonds behave a bit\u00a0like flexible springs that connect two balls: they can\u00a0<strong>vibrate<\/strong>, a general term we&#8217;ll use to cover such motions as stretching, bending, twisting, and others. At the molecular level, the energies of these motions are\u00a0<strong>quantized:\u00a0<\/strong>like steps on a staircase or ladder, each motion has a particular\u00a0<strong>energy level<\/strong>.<\/p>\n<p>The steps between these &#8220;vibrational&#8221; energy levels are much <strong>smaller<\/strong> than the &#8220;steps&#8221; we saw between\u00a0<strong>electronic<\/strong> energy levels (i.e. orbitals) . In other words,\u00a0<strong>less energy<\/strong> is required for transitions between vibrational energy levels than is required for electronic transitions.<\/p>\n<p>You can visualize it a bit like this. It&#8217;s not perfect, but it gets the point across.<\/p>\n<p><img decoding=\"async\" class=\"alignnone wp-image-15460\" src=\"https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/3-electronic-versus-vibrational-energy-levels-like-various-decks-in-a-football-stadium-decks-are-electronic-rows-are-vibrational.png\" alt=\"electronic versus vibrational energy levels like various decks in a football stadium decks are electronic rows are vibrational\" width=\"450\" height=\"297\" srcset=\"https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/3-electronic-versus-vibrational-energy-levels-like-various-decks-in-a-football-stadium-decks-are-electronic-rows-are-vibrational.png 650w, https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/3-electronic-versus-vibrational-energy-levels-like-various-decks-in-a-football-stadium-decks-are-electronic-rows-are-vibrational-300x198.png 300w, https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/3-electronic-versus-vibrational-energy-levels-like-various-decks-in-a-football-stadium-decks-are-electronic-rows-are-vibrational-320x211.png 320w, https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/3-electronic-versus-vibrational-energy-levels-like-various-decks-in-a-football-stadium-decks-are-electronic-rows-are-vibrational-640x422.png 640w, https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/3-electronic-versus-vibrational-energy-levels-like-various-decks-in-a-football-stadium-decks-are-electronic-rows-are-vibrational-360x238.png 360w\" sizes=\"(max-width: 450px) 100vw, 450px\" \/><\/p>\n<p>Think of the &#8220;decks&#8221; as the energy levels of orbitals, and the &#8220;rows&#8221; as the vibrational energy levels.<\/p>\n<p>The existence of these vibrational energy levels explains why delta E can take on a range of values, and hence why UV spectra for molecules can be broad.<\/p>\n<p>Why? Because each of the following would be a valid electronic transition between orbitals:<\/p>\n<ul>\n<li>Ground level, row 1\u00a0\u2192 Lower deck, row 1 \u00a0(\u0394E<sub>1<\/sub>)<\/li>\n<li>Ground level, row 1\u00a0\u2192 Lower deck, row 2 \u00a0(\u0394E<sub>2<\/sub>)<\/li>\n<li>Ground level, row 1\u00a0\u2192 Lower deck, row 3 \u00a0(\u0394E<sub>3<\/sub>)<\/li>\n<li>Ground level, row 1\u00a0\u2192 Lower deck, row 4 \u00a0(\u0394E<sub>4<\/sub>)<\/li>\n<\/ul>\n<p>and so on.<\/p>\n<p>The\u00a0\u0394E values should correspond to a <em>series<\/em> of absorbance peaks spaced out by the difference in energy between the vibrational energy levels (or the &#8220;spacing between rows&#8221; in our analogy).<\/p>\n<p>In theory, \u00a0we should be able to observe the\u00a0spacing between these\u00a0peaks (so-called &#8220;fine structure&#8221;). In practice, we tend not to, for reasons that aren&#8217;t that important for our purposes.<em> [ If you&#8217;re desperate to know why not, <a href=\"#noteone\">Note 1<\/a>.]<\/em><\/p>\n<p>In rare cases we\u00a0<em>can<\/em> see the fine structure\u00a0in UV spectra, however. For example, look at the UV spectrum of benzene, below. See those individual peaks?\u00a0Those represent transitions into individual vibrational energy levels.<\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-15461\" src=\"https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/4-uv-vis-spectrum-of-benzene-with-individual-peaks-corresponding-to-differences-in-vibrational-energy-levels.jpg\" alt=\"uv vis spectrum of benzene with individual peaks corresponding to differences in vibrational energy levels\" width=\"325\" height=\"288\" \/><\/p>\n<p>We sometimes represent transitions from ground to excited states using a <a href=\"https:\/\/en.wikipedia.org\/wiki\/Franck\u2013Condon_principle\">Franck-Condon diagram<\/a>. You can think of it as a more rigorous version of our stadium analogy.<\/p>\n<p>The bottom level (green line) attempts to show the spacing of vibrational energy levels in the ground state. Upon absorption of a photon of energy\u00a0\u0394E, an electron is promoted from the ground state to one of the vibrational levels in the excited state (red line). <span style=\"color: #993366;\"><em>[Extra detail: The &#8220;minimum&#8221; of the green and red lines corresponds to the bond length in the ground and excited states respectively; they don&#8217;t overlap because the bond length in the excited state\u00a0is longer. The F-C diagram is a useful model because electronic transitions are fast, relative to movements of atoms.]\u00a0<\/em><\/span><\/p>\n<p>This is more detail than you likely need. The &#8220;stadium analogy&#8221; is a perfectly fine intuitive model to use.<\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-15462\" src=\"https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/5-franck-condon-diagram-energy-levels-showing-ground-state-and-excited-state-various-vibrational-energy-levels-as-sub-levels-of-electronic-levels.gif\" alt=\"franck condon diagram energy levels showing ground state and excited state various vibrational energy levels as sub levels of electronic levels\" width=\"600\" height=\"640\" \/><\/p>\n<h2><strong><a id=\"three\"><\/a>3. Visualizing Vibrational Energy Levels: The &#8220;Ball And Spring&#8221; Model<\/strong><\/h2>\n<p>So how can we visualize exactly how these &#8220;vibrational energy levels&#8221; differ, and what they look like? \u00a0And how do they relate to energy?<\/p>\n<p>The &#8220;ball and spring&#8221; model is a great mental model\u00a0to start with.<\/p>\n<ul>\n<li>Imagine two atoms (balls) attached by a spring (the bond).<\/li>\n<li>The spring allows for\u00a0vibration to occur. \u00a0We can visualize this vibration as <strong>standing waves.<\/strong><\/li>\n<li>In a resting state we can imagine a simple standing wave with no nodes (i.e. no locations where the amplitude is zero) along its length.<\/li>\n<li>If the energy is increased by a certain integer amount corresponding to \u0394E, \u00a0a transition occurs to a higher vibrational energy level where the wave now has a single node. This is the first &#8220;excited&#8221; vibrational state.<\/li>\n<li>As more energy is applied to the system, additional energy levels will appear with an increasing number of nodes, roughly in integer increments of\u00a0\u0394E<\/li>\n<\/ul>\n<p>The main idea of increased vibrational energy levels is conveyed by this GIF \u00a0[<a href=\"https:\/\/www.youtube.com\/watch?v=BSIw5SgUirg\">Adapted from this video<\/a>]<\/p>\n<p><iframe class=\"giphy-embed\" src=\"https:\/\/giphy.com\/embed\/YSBF8ZLMoz4jzQBeZH\" width=\"480\" height=\"270\" frameborder=\"0\" allowfullscreen=\"allowfullscreen\"><\/iframe><\/p>\n<p><a href=\"https:\/\/giphy.com\/gifs\/YSBF8ZLMoz4jzQBeZH\">via GIPHY<\/a><\/p>\n<p>Higher frequency = more energy.<\/p>\n<p>That&#8217;s the simple picture, which is enough for our purposes here.<\/p>\n<p><span style=\"color: #993366;\"><em>[For a more rigorous mathematical description, you might want to\u00a0read about<a style=\"color: #993366;\" href=\"https:\/\/en.wikipedia.org\/wiki\/Quantum_harmonic_oscillator\">\u00a0quantum harmonic oscillators<\/a>. \u00a0More detail: not all atoms or vibrations are &#8220;IR-active&#8221;. Selection rules for vibrational transitions necessitate a change in dipole moment. This leads to several different types of vibration, such as bending, twisting, scissoring, and others, which are covered in the <a style=\"color: #993366;\" href=\"https:\/\/en.wikipedia.org\/wiki\/Infrared_spectroscopy\">wikipedia article<\/a>].<\/em><\/span><\/p>\n<h2><strong><a id=\"four\"><\/a>4. Two Quick Insights From The &#8220;Ball And Spring&#8221; Model<\/strong><\/h2>\n<p>The Ball and Spring model can also help us make two important visualizations that will help make the interpretation of molecular vibration more intuitive.<\/p>\n<h3><strong>1.The Effect of Mass. [Increasing Mass = Lower Frequency of Vibration]<\/strong><\/h3>\n<ul>\n<li>Take two balls connected by a spring. Given an input of energy, they will vibrate at a given frequency.<\/li>\n<li>Now:\u00a0<strong>increase the mass of one of the balls<\/strong>. What happens to the frequency?<\/li>\n<li>It goes\u00a0<b>down.\u00a0<\/b>It&#8217;s a bit like the difference in sound between a thin metal guitar string and a thicker, heavier guitar string.<\/li>\n<\/ul>\n<p>Translation:\u00a0<strong>increasing the mass of an atom will decrease the frequency\u00a0at which the bond vibrates. (and vice-versa: decreasing the mass will increase the vibrational frequency)<\/strong><\/p>\n<h3><strong>2. The Effect of Tension. [More Tension = Higher Frequency of Vibration]<\/strong><\/h3>\n<ul>\n<li>Take the two balls connected by a spring, as above.<\/li>\n<li>Now<strong> increase the strength of the spring, making it more stiff.\u00a0<\/strong>What will happen to the frequency of vibration?<\/li>\n<li><strong>It goes up<\/strong>. If you&#8217;ve ever tuned a guitar string, you can visualize this by the increase in pitch obtained as you tighten one of the tuning keys.<\/li>\n<\/ul>\n<p>Translation: <strong>increasing the strength of a bond will increase the frequency at which the bond vibrates. (and vice-versa:\u00a0weakening a bond will decrease the vibrational frequency)<\/strong><\/p>\n<p>Keep these two factors in mind as we go forward, because they will help you intuitively feel your way through our coverage of IR spectroscopy.<\/p>\n<h2><a id=\"five\"><\/a>5. Infrared (IR) Spectroscopy Is Used To Observe Bond Vibrations<\/h2>\n<p>In UV-vis spectroscopy we saw that photons of wavelength 200-700 nm stimulated electronic transitions between orbitals.<\/p>\n<p>From UV-Vis spectroscopy we are\u00a0able to determine important clues about molecular structure: namely, it gives us an idea of how many pi bonds are present in a molecule, whether carbonyls (C=O) are present, whether or not pi bonds are conjugated, and so on.<\/p>\n<p>Vibrational energy levels in bonds\u00a0are stimulated by photons of wavelength 2500 &#8211; 25000 nm.\u00a0\u00a0[Recall that since \u00a0E = <em>h<\/em>\u03bd and c = \u03bd\u03bb\u00a0, <strong>longer wavelength also means that these photons are lower<\/strong> <strong>energy <\/strong>than photons of visible light.]<\/p>\n<p>This corresponds to the <span style=\"text-decoration: underline;\">mid-infrared (IR)<\/span> region of the spectrum.<\/p>\n<p>This presents an idea:\u00a0<strong>if we\u00a0measure where a molecule absorbs infrared light<\/strong>, <strong>perhaps\u00a0<\/strong><strong>we\u00a0can gain some clues about the nature of the bonds in a molecule!\u00a0<\/strong><\/p>\n<p>This is the basic idea behind\u00a0<strong>Infrared (IR) Spectroscopy! \u00a0<\/strong>We expose a sample to infrared light and measure its absorbance versus the frequency. We then examine\u00a0the pattern of peaks and valleys in the resulting spectrum.<\/p>\n<p>It turns out to be a useful and powerful spectroscopic technique.<\/p>\n<h2><a id=\"six\"><\/a>6. The Energies Involved In UV-Vis Spectroscopy Are About 30-40 Times Higher Than The Energies In Infrared Spectroscopy<\/h2>\n<p>Before we get started exploring this idea, two charts to help put things into perspective.<\/p>\n<p>First, let&#8217;s call up a picture of the electromagnetic spectrum to give you an idea of where the appropriate wavelengths for IR spectroscopy fit in relation to those for UV-Vis spectroscopy. We care about the <strong>yellow band\u00a0<\/strong>below. \u00a0[Note that not\u00a0<em>all<\/em> IR radiation is equally relevant for stimulating bond vibrations: for our purposes, we&#8217;ll only be concerned about the region in the yellow window (2500 nm to 25000 nm; alternatively 2.5 \u03bcm to 25 \u03bcm).]<\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-15463\" src=\"https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/7-electromagnetic-spectrum-showing-where-electronic-and-vibrational-transitions-occur-uv-vis-is-visible-light-vibrational-is-IR-radiation-much-less-energetic.gif\" alt=\"electromagnetic spectrum showing where electronic and vibrational transitions occur uv vis is visible light vibrational is IR radiation much less energetic\" width=\"630\" height=\"470\" \/><\/p>\n<p>Secondly, let&#8217;s put the\u00a0<strong>energies<\/strong> into perspective.<\/p>\n<p>Recall that a typical C-H bond has a strength (i.e. <a href=\"https:\/\/www.masterorganicchemistry.com\/2010\/06\/25\/bond-dissociation-energies-homolytic-cleavage\/\">bond dissociation energy<\/a>) of about <strong>100 kcal\/mol<\/strong> and the difference between the eclipsed and staggered forms of ethane are about <strong>3 kcal\/mol<\/strong>.<\/p>\n<p>That is a pretty good comparison of the energies involved in UV-Vis spectroscopy and those in IR spectroscopy.<\/p>\n<p><strong>Ultraviolet radiation<\/strong> is energetic enough to promote electrons from lower energy orbitals up to higher energy orbitals, potentially leading to bond dissociation. <span style=\"color: #993366;\"><em>[We use sunscreen for good reason! A single base-pair mutation caused by a stray UV photon could lead to DNA damage and possible cancer.]<\/em><\/span><\/p>\n<p>In contrast, IR radiation is much more mild.<\/p>\n<p>Here&#8217;s a quick table comparing the energies, wavelengths, and frequencies of UV-Vis and mid-IR radiation side by side.<\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-15464\" src=\"https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/8-comparison-of-energies-for-uv-vis-and-ir-spectroscopy-uv-vis-is-abourt-40-to-160-kcal-mol-ir-spectroscopy-is-1-to-10-kcal-mol.gif\" alt=\"comparison of energies for uv vis and ir spectroscopy uv vis is abourt 40 to 160 kcal mol ir spectroscopy is 1 to 10 kcal mol\" width=\"600\" height=\"350\" \/><\/p>\n<h2><a id=\"seven\"><\/a>7. A Simple IR Spectrum: Water<\/h2>\n<p>In UV-Vis spectroscopy, we generally\u00a0plot the <strong>absorbance<\/strong> of a sample versus the wavelength of light. This gives us a &#8220;baseline&#8221; on the <strong>bottom<\/strong> of the graph which rises to peaks (absorbance maxima) in regions where the sample absorbs UV-Vis radiation. It looks like the cross-section of a mountain range.<span style=\"color: #993366;\"><em> [There&#8217;s admittedly some variation here &#8211; UV-Vis spectra often are run in &#8220;transmittance&#8221; mode as well, such as the spectrum of butadiene at the top of the post]<\/em><\/span><\/p>\n<p>In IR spectroscopy, we usually\u00a0plot\u00a0<strong>transmittance<\/strong> of a sample on the y axis versus\u00a0<strong>wavenumber\u00a0<\/strong>on the x axis. This give us a &#8220;baseline&#8221; on the top\u00a0with &#8220;peaks&#8221; (actually &#8220;troughs&#8221;) pointing to the bottom. It looks like the cross-section of a measurement of the ocean floor or a lake.<\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-15465\" src=\"https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/9-absorbance-mode-most-uv-spectra-transmittance-mode-most-ir-spectra-shows-baseline-and-peak.gif\" alt=\"absorbance mode most uv spectra transmittance mode most ir spectra shows baseline and peak\" width=\"630\" height=\"306\" \/><\/p>\n<p>In the olden days a device called a diffraction grating was used to\u00a0scan\u00a0a sample\u00a0with\u00a0a range of wavelengths <span style=\"color: #993366;\"><em>(&#8220;continuous wave&#8221; spectroscopy)<\/em><\/span> and a graph of wavelength versus absorbance would be obtained. \u00a0In more modern times we use a technique called Fourier Transform Infrared Spectroscopy (FTIR) and subject the sample to all frequencies at once, and deconvolute the results using math. That&#8217;s beyond what I&#8217;ll get into here. <a href=\"http:\/\/www2.chemistry.msu.edu\/faculty\/reusch\/VirtTxtJml\/Spectrpy\/Infrared\/infrared.htm\">Reusch<\/a> and many others have more background on how spectrometers work.<\/p>\n<h2><a id=\"eight\"><\/a>8. Transmittance, Absorbance, Wavenumber<\/h2>\n<p>Let&#8217;s define some terms:<\/p>\n<ul>\n<li><strong>Transmittance<\/strong> is the inverse of absorbance. A clear, colourless pane of glass has near 100% transmittance of visible light. \u00a0A piece of coloured glass will have 100% transmittance at certain frequencies, while less transmittance (i.e. strong absorbance) at other frequencies. When we graph transmittance versus wavelength we obtain an appearance which is &#8220;flipped&#8221; in relation to a typical UV spectrum. The <strong>baseline<\/strong> is at the<strong> top<\/strong>, and\u00a0&#8220;absorbance peaks&#8221; point towards the\u00a0<strong>bottom<\/strong>, depending on the strength.<\/li>\n<li><strong>Wavenumber<\/strong>\u00a0is the\u00a0inverse of wavelength (1\/\u00a0\u03bb) : it corresponds to the number of cycles in a given unit of length, and is thus a measure of <strong>frequency<\/strong>. \u00a0<strong>\u00a0<\/strong>The left-hand region of the spectrum (at 4000 cm<sup>-1<\/sup>) is <strong>high-frequency<\/strong>; the right-hand region (at about 400 cm<sup>-1<\/sup>) is <strong>low frequency<\/strong>.<\/li>\n<\/ul>\n<p>You might ask: why &#8220;wavenumber&#8221; instead of wavelength? Good question! \u00a0[<a href=\"#notetwo\">Note 2<\/a>].<\/p>\n<p>Now let&#8217;s look at a relatively simple infrared spectrum. Here&#8217;s the IR spectrum of water.<\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-15466\" src=\"https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/10-ir-spectrum-of-water-showing-various-baseline-and-peaks-max-absorbance-around-3300.png\" alt=\"ir spectrum of water showing various baseline and peaks max absorbance around 3300\" width=\"450\" height=\"270\" srcset=\"https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/10-ir-spectrum-of-water-showing-various-baseline-and-peaks-max-absorbance-around-3300.png 600w, https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/10-ir-spectrum-of-water-showing-various-baseline-and-peaks-max-absorbance-around-3300-300x180.png 300w, https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/10-ir-spectrum-of-water-showing-various-baseline-and-peaks-max-absorbance-around-3300-320x192.png 320w, https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/10-ir-spectrum-of-water-showing-various-baseline-and-peaks-max-absorbance-around-3300-360x216.png 360w\" sizes=\"(max-width: 450px) 100vw, 450px\" \/><\/p>\n<p>A few things to note:<\/p>\n<ul>\n<li>The region on the left (toward\u00a04000\u00a0cm<sup>-1<\/sup>) corresponds to high frequency and short wavelength; the region on the right (toward 400 cm<sup>-1<\/sup>) corresponds to low frequency and long wavelength.<\/li>\n<li>The &#8220;baseline&#8221; at the top of the page is not very flat. That&#8217;s <strong>normal<\/strong>. We typically do something called &#8220;baseline correction&#8221; to try to make it look better, but that rarely makes it look perfect.<\/li>\n<li>The major &#8220;peaks&#8221; for water are at about 3200-3600 cm<sup>-1<\/sup> (very broad and strong), 1600\u00a0cm<sup>-1<\/sup>\u00a0(relatively sharp) and then another peak around 700 cm<sup>-1<\/sup>\u00a0 that is also quite broad.<\/li>\n<li>See that peak around 2200 that is weak and broad and somewhat undefined? That&#8217;s the kind of peak we typically ignore.<\/li>\n<\/ul>\n<p>The most important thing to note is that <strong>each of these peaks corresponds to the vibration of a\u00a0chemical bond in the sample which is being promoted by infrared light.\u00a0<\/strong><\/p>\n<p>Hence, a different way of looking at it is that\u00a0<strong>each molecule will give a characteristic &#8220;IR fingerprint&#8221; corresponding to the bonds present in the molecule.\u00a0<\/strong><\/p>\n<h2><a id=\"nine\"><\/a>9. A Not-So-Simple IR Spectrum. Oh Crap, What Do We Do?<\/h2>\n<p>For some perspective, let&#8217;s look at a not-so-simple IR spectrum.<\/p>\n<p>Here&#8217;s an IR spectrum for glucose. You might expect that it should be more complex than water, and boy is it ever.<\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-15467\" src=\"https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/11-ir-spectrum-of-glucose-showing-lots-of-peaks-very-complicated-maximum-around-3200.png\" alt=\"ir spectrum of glucose showing lots of peaks very complicated maximum around 3200\" width=\"450\" height=\"270\" srcset=\"https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/11-ir-spectrum-of-glucose-showing-lots-of-peaks-very-complicated-maximum-around-3200.png 600w, https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/11-ir-spectrum-of-glucose-showing-lots-of-peaks-very-complicated-maximum-around-3200-300x180.png 300w, https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/11-ir-spectrum-of-glucose-showing-lots-of-peaks-very-complicated-maximum-around-3200-320x192.png 320w, https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/11-ir-spectrum-of-glucose-showing-lots-of-peaks-very-complicated-maximum-around-3200-360x216.png 360w\" sizes=\"(max-width: 450px) 100vw, 450px\" \/><\/p>\n<p><strong>Crap<\/strong>, you might be thinking.\u00a0<strong>Look at all those peaks!!!!<\/strong><\/p>\n<p><strong>&#8220;Do I really have to know what each of them mean? &#8220;<\/strong><\/p>\n<p>The good news is\u00a0<strong>no<\/strong>. Especially not in the region below 1000 cm<sup>-1<\/sup>.<\/p>\n<h2><a id=\"ten\"><\/a>10. Don&#8217;t Panic!<\/h2>\n<p>We&#8217;ll see that for most purposes, we can boil down an analysis of an IR spectrum to a relatively short exercise since <strong>we will mostly be using IR as a tool for identifying the presence (or absence) of specific functional groups.\u00a0<\/strong><\/p>\n<h3><strong>We&#8217;ll leave that to the next post : <a href=\"https:\/\/www.masterorganicchemistry.com\/2016\/11\/23\/quick_analysis_of_ir_spectra\/\">Interpreting IR Spectra, A Quick Guide<\/a><\/strong><\/h3>\n<p><span style=\"color: #993366;\"><em>[You can stop here if you like without missing much. However, if you want some more background on how to read IR spectra more intuitively, I&#8217;m including two extra examples below. ]<\/em><\/span><\/p>\n<hr \/>\n<h2><a id=\"ten\"><\/a>Bonus Track: The &#8220;Ball And Spring&#8221; Model of Bond Vibration, Illustrated With Two Examples<\/h2>\n<p>In the article above, we touched on the &#8220;ball and spring&#8221; model for bond vibration. Here, let&#8217;s expand on this by using some concrete examples in IR spectroscopy.<\/p>\n<h2>1. The Effect of Mass<\/h2>\n<p>First, we said that\u00a0<strong><span style=\"text-decoration: underline;\">increasing<\/span> the mass of one of the balls should lead to a <span style=\"text-decoration: underline;\">decrease<\/span> in the frequency of vibration.<\/strong><\/p>\n<p>One simple way to do this is to investigate the effect of\u00a0<strong>isotopes\u00a0<\/strong>on the vibrational frequency.<\/p>\n<p>For example, we&#8217;ve already seen what the IR spectrum of H<sub>2<\/sub>O looks like.<\/p>\n<p>Now: what happens when we replace hydrogen with deuterium?<\/p>\n<p>This will effectively\u00a0<strong>double<\/strong> the mass of one of the &#8220;balls&#8221; in each bond.<\/p>\n<p>What effect do you predict this will have on the frequency of vibration? It should\u00a0<strong>decrease significantly. \u00a0<\/strong><\/p>\n<p>And that&#8217;s exactly what we see:<\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-15468\" src=\"https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/F1-comparison-of-h2o-ir-spectrum-versus-d2o-ir-spectrum-o-d-stretch-about-2200-to-2700-because-heavier-atom-D.png\" alt=\"comparison of h2o ir spectrum versus d2o ir spectrum o d stretch about 2200 to 2700 because heavier atom D\" width=\"450\" height=\"175\" srcset=\"https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/F1-comparison-of-h2o-ir-spectrum-versus-d2o-ir-spectrum-o-d-stretch-about-2200-to-2700-because-heavier-atom-D.png 600w, https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/F1-comparison-of-h2o-ir-spectrum-versus-d2o-ir-spectrum-o-d-stretch-about-2200-to-2700-because-heavier-atom-D-300x117.png 300w, https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/F1-comparison-of-h2o-ir-spectrum-versus-d2o-ir-spectrum-o-d-stretch-about-2200-to-2700-because-heavier-atom-D-320x125.png 320w, https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/F1-comparison-of-h2o-ir-spectrum-versus-d2o-ir-spectrum-o-d-stretch-about-2200-to-2700-because-heavier-atom-D-360x140.png 360w\" sizes=\"(max-width: 450px) 100vw, 450px\" \/><\/p>\n<p>Note how that that big &#8220;blob&#8221; which was at 3200-3600 cm<sup>-1<\/sup> (blue asterisk) has moved down to the region between about 2200-2700 cm<sup>-1<\/sup> (lower frequency) as predicted. This corresponds to the frequency of vibration of an O-D bond.<\/p>\n<p>It also occurs for the other O-H vibration which is indicated by the pink asterisk.<\/p>\n<p>Note that we see such a dramatic effect because of the tremendous difference in mass between H and D (200%). The effect for other isotopes will be considerably lower. For example, the mass of\u00a0<sup>13<\/sup>C is only about 8% larger than that of\u00a0<sup>12<\/sup>C, and we should expect that the effect is much lower.<\/p>\n<h2>2. The Effect of Bond Strength<\/h2>\n<p>The second component of our mental model is that\u00a0<strong>increasing the tension of the spring should increase the frequency.\u00a0<\/strong>This correlates with increasing the bond strength between atoms.<\/p>\n<p>Let&#8217;s run the test in our minds first.<\/p>\n<p>Compare C-C versus C=C versus C\u2261C . Which bond is the strongest?<\/p>\n<p>The triple bond\u00a0C\u2261C\u00a0, by far (835 kJ\/mol or 200 kcal\/mol, compared to 346 kJ\/mol or 82 kcal\/mol for the C-C single bond).<\/p>\n<p>According to the &#8220;ball and spring&#8221; model, that means that its frequency of vibration should be the highest.<\/p>\n<p>That&#8217;s indeed what we observe;\u00a0<strong>the stronger the bond, the higher the vibration frequency.\u00a0<\/strong><\/p>\n<p>This applies to bond order (single vs. double vs. triple bonds), as seen in this table:<\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-15469\" src=\"https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/F2-absorption-frequency-increases-with-increasing-bond-order-highest-frequency-for-triple-bonds-lowest-for-single-bonds.gif\" alt=\"absorption frequency increases with increasing bond order highest frequency for triple bonds lowest for single bonds\" width=\"630\" height=\"195\" \/><\/p>\n<p>It also applies to bonds of hydrogen connected to sp<sup>3<\/sup>, sp<sup>2<\/sup>, and sp-hybridized carbons, which have bond strengths of (roughly) 100 kcal\/mol, 110 kcal\/mol, and 130 kcal\/mol respectively.<\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-15470\" src=\"https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/F3-stronger-the-bond-the-higher-the-frequency-sp3-ch-is-lowest-sp-ch-is-highest-alkyne-ch-about-3400.gif\" alt=\"stronger the bond the higher the frequency sp3 ch is lowest sp ch is highest alkyne ch about 3400\" width=\"630\" height=\"219\" \/><\/p>\n<p>We could go on. But this seems like a good place to stop.\u00a0We can return to this theme as we continue with further posts on IR.<\/p>\n<p>One final question.<\/p>\n<p>Which do you think will have a higher absorption frequency: the C=O bond in ketones, or the C=O bond in amides? This is directly connected to what we&#8217;ve just been discussing.<\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-15471\" src=\"https:\/\/www.masterorganicchemistry.com\/wp-content\/uploads\/2019\/12\/F4-question-between-amide-and-ketone-which-will-have-higher-c-o-absorption-frequency-and-why-compare-resonance-forms.gif\" alt=\"question between amide and ketone which will have higher c o absorption frequency and why compare resonance forms\" width=\"600\" height=\"151\" \/><\/p>\n<p>Hint: think about the most important resonance forms of each.<\/p>\n<p><em>Answer at the very bottom of the post.\u00a0<\/em><\/p>\n<hr \/>\n<h2><a id=\"notes\"><\/a>Notes<\/h2>\n<div class=\"related-articles\"><p><strong>Related Articles<\/strong><\/p><ul><li><a href=\"https:\/\/www.masterorganicchemistry.com\/2016\/11\/23\/quick_analysis_of_ir_spectra\/\" class=\"\"><span>Infrared Spectroscopy: A Quick Primer On Interpreting Spectra<\/span><\/a><\/li><li><a href=\"https:\/\/www.masterorganicchemistry.com\/2016\/11\/29\/ir-spectroscopy-some-simple-practice-problems\/\" class=\"\"><span>IR Spectroscopy: 4 Practice Problems<\/span><\/a><\/li><li><a href=\"https:\/\/www.masterorganicchemistry.com\/2016\/09\/26\/uv-vis-spectroscopy-absorbance-of-carbonyls\/\" class=\"\"><span>UV-Vis Spectroscopy: Absorbance of Carbonyls<\/span><\/a><\/li><li><a href=\"https:\/\/www.masterorganicchemistry.com\/2016\/09\/16\/introduction-to-uv-vis-spectroscopy\/\" class=\"\"><span>Introduction To UV-Vis Spectroscopy<\/span><\/a><\/li><li><a href=\"https:\/\/www.masterorganicchemistry.com\/2022\/02\/08\/1h-nmr-how-many-signals\/\" class=\"\"><span>1H NMR: How Many Signals?<\/span><\/a><\/li><li><a href=\"https:\/\/www.masterorganicchemistry.com\/2022\/02\/08\/c13-nmr-how-many-signals\/\" class=\"\"><span>C13 NMR \u2013 How Many Signals<\/span><\/a><\/li><\/ul><\/div>\n<p><strong><a id=\"noteone\"><\/a>Note 1<\/strong>: We generally don&#8217;t observe them because these vibrational energy levels are further broken up into smaller\u00a0<em>rotational\u00a0<\/em>energy levels, which have even smaller gaps in energy (in the microwave region).\u00a0These rotational energy levels can be observed in the gas-phase spectra of <a href=\"http:\/\/webbook.nist.gov\/cgi\/cbook.cgi?ID=C7647010&amp;Type=IR-SPEC&amp;Index=0#IR-SPEC\">very simple molecules like HCl<\/a>. One of the reason why benzene has fine structure visible is because its rigidity cuts down on the number of available rotational energy states.<\/p>\n<p><a id=\"notetwo\"><\/a><strong>Note 2<\/strong>:<\/p>\n<p>In the older literature (<a href=\"https:\/\/www.masterorganicchemistry.com\/2016\/08\/23\/structure-determination-case-study-deer-tarsal-gland-pheremone\/\">such as in the structure determination of\u00a0deer tarsal gland pheromone<\/a>) IR peaks\u00a0were given in units of wavelength \u03bb \u00a0(in units of \u03bcm, or micrometers). Over time, common practice has changed over to\u00a0wavenumber, 1\/\u03bb (in cm<sup>-1<\/sup>) . I think this is because &#8220;wavenumber&#8221; is a more intuitive unit to use:<\/p>\n<ul>\n<li>In talking about vibration, it helps to use the &#8220;ball and spring&#8221; mental model.<\/li>\n<li>Frequency is the most intuitive unit to use when discussing vibration (as opposed to wavelength) due to our vast experience with sound (e.g. stronger bond = tighter spring, \u00a0analogous to higher tension on a string = vibrates at higher frequency).<\/li>\n<li>When we use &#8220;wavelength&#8221; on the x-axis, high numbers correspond to low energy (low frequency) and low numbers correspond to high energy (high frequency). This causes dissonance since you&#8217;re always inverting wavelength and frequency in your mind.<\/li>\n<li>Inverting the wavelength \u03bb\u00a0(in nm) to give the wavenumber 1\/\u00a0\u03bb \u00a0(in cm<sup>-1<\/sup>) relieves the dissonance. Higher wavenumber now corresponds to higher frequency.<\/li>\n<\/ul>\n<p>Discussion on Chemistry Stack Exchange <a href=\"http:\/\/chemistry.stackexchange.com\/questions\/32137\/why-is-wavenumber-used-in-ir-spectroscopy-rather-than-wavelength\">here.<\/a><\/p>\n<p><span style=\"color: #993366;\"><em>[answer to question: consider the resonance forms. draw a resonance form for each where the C-O is a single bond. In which functional group will that resonance forms will be more important: for a ketone, or for an amide? Therein lies the answer]<\/em><\/span><\/p>\n","protected":false},"excerpt":{"rendered":"<p>The &#8220;Ball And Spring&#8221; Mental Model\u00a0 For Infrared Spectroscopy Table of Contents \u00a0Why do UV spectra have such broad peaks? The &#8220;stadium&#8221; analogy. Introduction to <\/p>\n","protected":false},"author":1,"featured_media":15458,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"footnotes":""},"categories":[386],"tags":[1128,1141,1139,307,1144,1140,1143,1119,1137,1142,1138],"post_folder":[],"class_list":["post-10196","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-spectroscopy-2","tag-absorbance","tag-absorbance-spectra","tag-frequency","tag-ir","tag-ir-spectra","tag-transitions","tag-transmittance","tag-uv","tag-vibration","tag-wavelength","tag-wavenumber"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.7 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Bond Vibrations, Infrared Spectroscopy, and the &quot;Ball and Spring&quot; Model<\/title>\n<meta name=\"description\" content=\"An overview of Infrared Spectroscopy: the ball and spring model, the &quot;stadium&quot; 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